Selected NRI Related Publications

Demyelination Diseases and Neuropathic Pain

Coggan JS, Sejnowski TJ, Prescott SA. J Comput Neurosci. 2015 Aug;39(1):17-28. doi: 10.1007/s10827-015-0562-8. Epub 2015 May 1. Cooperativity between remote sites of ectopic spiking allows afterdischarge to be initiated and maintained at different locations.

Coggan JS, Bittner S, Stiefel KM, Meuth SG, Prescott SA. Int J Mol Sci. 2015 Sep 7;16(9):21215-36. doi: 10.3390/ijms160921215.Physiological Dynamics in Demyelinating Diseases: Unraveling Complex Relationships through Computer Modeling.

 J.S. Coggan, G.K. Ocker, T.J. Sejnowski, S.A. Prescott, Explaining pathological changes in axonal excitability through dynamical analysis of conductance-based models. J Neural Eng. 2011 Dec;8(6):065002. doi: 10.1088/1741-2560/8/6/065002. Epub 2011 Nov 4.

J.S. Coggan, S.A. Prescott, T.M. Bartol, T.J. Sejnowski, Imbalance of ionic conductances contributes to diverse symptoms of demyelination, Proc Natl Acad Sci U S A. 2010 Nov 30;107(48):20602-9. doi: 10.1073/pnas.1013798107. Epub 2010 Oct 25.


K.M. Stiefel, B. Torben-Nielsen, J.S. Coggan, Proposed evolutionary changes in the role of myelin . Front Neurosci. 2013 Nov 8;7:202. doi: 10.3389/fnins.2013.00202. eCollection 2013.

Other Models

Stiefel KM, Ermentrout GB. J Neurophysiol. 2016 Dec 1;116(6):2950-2960. doi: 10.1152/jn.00525.2015. Epub 2016 Sep 28. Neurons as oscillators.


Open Worm Project

A. Palyanov, S. Khayrulin, S. D. Larson, A. Dibert, Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment, In Silico Biol. 2011-2012;11(3-4):137-47. doi: 10.3233/ISB-2012-0445.

G. Idili, M. Cantarelli, M. Buibas, T. Busbice, J.S. Coggan, C. Grove, S. Khayrulin, A. Palyanov, S.D. Larson, Managing Complexity in Multi-Algorithm, Multi-Scale Biological Simulations: An Integrated Software Engineering and Neuroinformatics Approach., Neuroinformatics 2012 Abstract Book.

Green Neuroscience Laboratory

 A. Lam, and E.L. Ohayon. On Building a Greener Neuroscience. Session 171: Neurotechnologies, Neuroethics, and Neuro-Identities: II. Society for Social Studies of Science (4S) Annual Meeting Program (2013) p. 143. San Diego, CA.

 E. L. Ohayon, T. Chailangkarn, A. R. Muotri, P. V. Chu, A. R. Munoz, U. Bellugi, T. J. Sejnowski, and A. Lam. Imaging Metal Distribution in Williams Syndrome Spatially and Across Time: From Cultured Cells to Postmortem Brain Tissue. Society for Neuroscience Abstracts (2013) 482.04. San Diego, CA.

 A. Lam, C. M. Florez, B. D. Kocar, S. M. Webb, L. Frutos, S. Mylvaganam, T. Valiante, P. L. Carlen, and E. L. Ohayon. Quantifying metal distributions using synchrotron x-ray fluorescence imaging of hippocampal tissue resected in human epilepsy surgery. Society for Neuroscience Abstracts (2013) 535.17. San Diego, CA.

 A.K. Lee, A. Lam, and E.L. Ohayon. Developing an Open Source Model for Studying Embodied Cognition and its Relationship to Spatial Neural Networks. Society for Neuroscience Abstracts (2013) 797.12. San Diego, CA.